JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HR_chr8_22109419_22136010	0/0	c0029	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0030	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0031	3570	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0032	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0033	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0034	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0035	3570	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0036	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0037	3570	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0038	3570	1	0	1	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0039	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0040	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0041	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0042	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0043	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0044	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0045	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0046	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0047	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0048	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0049	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0050	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0051	3570	1	0	0	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0052	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HS1BP3_chr2_20612818_20656098	0/0	c0001	1179	89	3	24	43	5	14	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/1	c0002	1179	88	18	21	35	5	8	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0003	1179	84	31	19	24	1	9	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0004	1179	51	9	3	28	1	10	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0005	1179	41	18	2	19	0	2	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0006	1179	14	0	7	6	1	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0007	1179	8	8	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0008	1179	4	1	1	0	2	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0009	1179	4	0	0	4	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0010	1179	3	0	2	0	1	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	1/0	c0011	1179	3	1	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0012	1179	2	0	0	1	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0013	1179	2	0	0	2	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0014	1179	2	0	0	2	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0015	1179	1	0	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0016	1179	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0017	1179	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0018	1179	1	0	0	1	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0019	1179	1	0	0	1	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0020	1179	1	0	1	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0021	1179	1	0	0	0	0	1	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0022	1179	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS1BP3_chr2_20612818_20656098	0/0	c0023	1179	1	1	0	0	0	0	copy fasta	HS1BP3	chr2	20612818	20656098
HS2ST1_chr1_86909635_87114982	1/1	c0001	1071	151	85	22	14	8	20	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	c0002	1071	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS2ST1_chr1_86909635_87114982	0/0	c0003	1071	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982