JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALCAM_chr3_105361909_105581900	0/0	c0010	1752	2	0	0	0	0	2	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0011	1752	2	1	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0012	1752	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0013	1752	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0014	1752	1	0	0	0	0	1	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0015	1752	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0016	1752	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALDH16A1_chr19_49448225_49476050	1/0	c0001	2409	145	23	35	66	2	18	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/1	c0002	2409	75	2	12	35	3	22	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0003	2409	48	22	20	0	5	1	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0004	2409	8	7	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0005	2409	7	5	0	1	0	1	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0006	2409	7	3	2	2	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0007	2409	7	6	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0008	2409	5	5	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0009	2409	4	2	0	1	1	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0010	2409	4	3	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0011	2409	3	2	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0012	2409	3	3	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0013	2409	3	0	2	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0014	2409	2	2	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0015	2409	2	2	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0016	2409	2	2	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0017	2409	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0018	2409	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0019	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0020	2409	1	0	0	0	1	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0021	2409	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0022	2409	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0023	2409	1	0	0	0	0	1	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0024	2409	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0025	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0026	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0027	2409	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0028	2409	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0029	2409	1	0	0	0	0	1	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0030	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0031	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0032	2409	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	c0033	2409	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH18A1_chr10_95600941_95661711	1/0	c0001	2388	318	76	57	144	11	29	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/1	c0002	2388	16	1	10	1	1	2	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0003	2388	8	0	4	0	3	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0004	2388	7	2	1	3	0	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0005	2388	7	0	2	4	0	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0006	2388	5	0	0	4	0	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0007	2388	1	0	1	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0008	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0009	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0010	2388	1	1	0	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711