JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HS2ST1_chr1_86909635_87114982	0/0	c0004	1071	1	1	0	0	0	0	copy fasta	HS2ST1	chr1	86909635	87114982
HS3ST1_chr4_11388150_11433894	1/0	c0001	924	333	65	72	152	15	28	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/1	c0002	924	89	21	8	41	3	15	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0003	924	7	7	0	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0004	924	5	3	2	0	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0005	924	3	0	0	3	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0006	924	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0007	924	1	0	0	0	0	1	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST1_chr4_11388150_11433894	0/0	c0008	924	1	0	0	1	0	0	copy fasta	HS3ST1	chr4	11388150	11433894
HS3ST2_chr16_22809162_22921338	1/0	c0001	1104	180	40	26	78	5	30	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/1	c0002	1104	107	15	35	45	5	6	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0003	1104	17	15	2	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0004	1104	17	9	4	0	1	3	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0005	1104	13	5	6	0	1	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0006	1104	6	6	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0007	1104	2	0	1	0	0	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0008	1104	2	0	2	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0009	1104	2	0	0	2	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0010	1104	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0011	1104	1	1	0	0	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0012	1104	1	0	0	1	0	0	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST2_chr16_22809162_22921338	0/0	c0013	1104	1	0	0	0	0	1	copy fasta	HS3ST2	chr16	22809162	22921338
HS3ST3A1_chr17_13489032_13606929	1/1	c0001	1221	167	58	29	53	10	15	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0002	1221	118	18	27	54	3	16	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0003	1221	11	0	0	7	0	4	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0004	1221	10	0	0	9	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0005	1221	9	0	0	9	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0006	1221	7	7	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0007	1221	4	4	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0008	1221	2	0	1	0	1	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0009	1221	2	1	0	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0011	1221	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0012	1221	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0013	1221	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0014	1221	1	0	1	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0015	1221	1	0	0	1	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0016	1221	1	0	0	0	0	1	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3A1_chr17_13489032_13606929	0/0	c0017	1221	1	1	0	0	0	0	copy fasta	HS3ST3A1	chr17	13489032	13606929
HS3ST3B1_chr17_14296081_14354404	1/0	c0001	1173	200	61	33	81	5	19	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/1	c0002	1173	195	13	39	109	9	24	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0003	1173	7	0	0	0	2	5	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0004	1173	6	6	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0005	1173	4	0	2	2	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0006	1173	4	4	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0007	1173	4	4	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0008	1173	3	3	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0009	1173	2	0	0	2	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404