JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HS3ST3B1_chr17_14296081_14354404	0/0	c0012	1173	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0013	1173	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0014	1173	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0015	1173	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST3B1_chr17_14296081_14354404	0/0	c0016	1173	1	1	0	0	0	0	copy fasta	HS3ST3B1	chr17	14296081	14354404
HS3ST4_chr16_25686959_26142685	0/0	c0001	1371	145	38	32	44	8	23	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0002	1371	9	8	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0003	1371	3	3	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0004	1371	2	2	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0005	1371	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0006	1371	1	0	0	0	0	1	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0007	1371	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0008	1371	1	0	1	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST4_chr16_25686959_26142685	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	HS3ST4	chr16	25686959	26142685
HS3ST5_chr6_114050596_114348023	1/1	c0001	1041	150	61	31	35	6	15	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	c0002	1041	54	10	20	15	2	7	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST5_chr6_114050596_114348023	0/0	c0003	1041	2	1	1	0	0	0	copy fasta	HS3ST5	chr6	114050596	114348023
HS3ST6_chr16_1906475_1923415	0/1	c0001	1029	177	18	30	103	2	23	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0002	1029	148	20	32	77	7	12	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0003	1029	36	19	12	2	2	1	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0004	1029	19	13	5	0	1	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0005	1029	13	7	0	1	0	5	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0006	1029	11	11	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0007	1029	6	0	0	5	1	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0008	1029	3	0	0	3	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0009	1029	3	0	0	3	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0010	1029	2	0	2	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0011	1029	2	2	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0012	1029	2	2	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0013	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0014	1029	1	0	0	0	1	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0015	1029	1	1	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0016	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0017	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0018	1029	1	0	1	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0019	1029	1	1	0	0	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0020	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0021	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0022	1029	1	0	0	1	0	0	copy fasta	HS3ST6	chr16	1906475	1923415
HS3ST6_chr16_1906475_1923415	0/0	c0023	1029	1	0	0	0	0	1	copy fasta	HS3ST6	chr16	1906475	1923415
HS6ST1_chr2_128260480_128323868	0/0	c0001	1236	202	77	49	55	5	16	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	1/1	c0002	1236	78	11	16	27	6	16	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0003	1236	9	0	0	3	3	3	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0004	1236	1	0	0	0	0	1	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0005	1236	1	0	1	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0006	1236	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0007	1236	1	0	0	1	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST1_chr2_128260480_128323868	0/0	c0008	1236	1	1	0	0	0	0	copy fasta	HS6ST1	chr2	128260480	128323868
HS6ST2_chrX_132621015_132963629	0/0	c0001	1938	188	47	24	82	11	24	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0002	1938	4	4	0	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629