JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HS6ST2_chrX_132621015_132963629	0/0	c0003	1938	2	0	1	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0004	1938	1	0	1	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0005	1938	1	0	0	1	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0006	1938	1	0	0	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0007	1938	1	0	0	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0008	1938	1	0	1	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0009	1938	1	1	0	0	0	0	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST2_chrX_132621015_132963629	0/0	c0010	1938	1	0	0	0	0	1	copy fasta	HS6ST2	chrX	132621015	132963629
HS6ST3_chr13_96085107_96844562	0/0	c0001	1416	110	46	21	32	6	5	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	c0002	1416	3	0	1	1	0	1	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	c0003	1416	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	c0004	1416	1	0	0	1	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HS6ST3_chr13_96085107_96844562	0/0	c0005	1416	1	1	0	0	0	0	copy fasta	HS6ST3	chr13	96085107	96844562
HSBP1L1_chr18_79959643_79975822	0/1	c0001	225	333	56	59	158	14	45	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	1/0	c0002	225	77	37	13	21	2	3	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	c0003	225	1	1	0	0	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1L1_chr18_79959643_79975822	0/0	c0004	225	1	0	0	1	0	0	copy fasta	HSBP1L1	chr18	79959643	79975822
HSBP1_chr16_83802978_83824737	1/1	c0001	231	467	95	82	222	18	48	copy fasta	HSBP1	chr16	83802978	83824737
HSBP1_chr16_83802978_83824737	0/0	c0002	231	1	1	0	0	0	0	copy fasta	HSBP1	chr16	83802978	83824737
HSCB_chr22_28737039_28762510	1/1	c0001	708	397	79	70	187	14	45	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0002	708	4	0	0	3	0	1	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0003	708	4	4	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0004	708	1	0	0	1	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0005	708	1	1	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0006	708	1	1	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0007	708	1	0	0	1	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSCB_chr22_28737039_28762510	0/0	c0008	708	1	1	0	0	0	0	copy fasta	HSCB	chr22	28737039	28762510
HSD11B1L_chr19_5676027_5693522	1/1	c0001	861	379	85	84	148	14	46	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	c0002	861	2	2	0	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1L_chr19_5676027_5693522	0/0	c0003	861	1	1	0	0	0	0	copy fasta	HSD11B1L	chr19	5676027	5693522
HSD11B1_chr1_209699846_209739929	1/1	c0001	879	399	84	63	202	14	34	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B1_chr1_209699846_209739929	0/0	c0002	879	1	0	1	0	0	0	copy fasta	HSD11B1	chr1	209699846	209739929
HSD11B2_chr16_67426121_67442553	1/1	c0001	1218	225	44	43	99	12	25	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0002	1218	28	27	1	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0003	1218	25	23	0	0	0	2	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0004	1218	3	0	2	0	1	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0005	1218	2	0	0	2	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0006	1218	1	0	0	1	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0007	1218	1	1	0	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0008	1218	1	0	1	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0009	1218	1	0	0	0	0	1	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0010	1218	1	1	0	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0011	1218	1	0	1	0	0	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD11B2_chr16_67426121_67442553	0/0	c0012	1218	1	0	0	0	1	0	copy fasta	HSD11B2	chr16	67426121	67442553
HSD17B10_chrX_53426261_53439370	1/1	c0001	786	276	60	48	127	9	30	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	c0002	786	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	c0003	787	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	c0004	787	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B10_chrX_53426261_53439370	0/0	c0005	787	1	0	0	1	0	0	copy fasta	HSD17B10	chrX	53426261	53439370
HSD17B11_chr4_87331515_87396188	1/0	c0001	903	285	38	44	165	6	31	copy fasta	HSD17B11	chr4	87331515	87396188