JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSD17B11_chr4_87331515_87396188	0/0	c0002	903	81	43	25	0	8	5	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	c0003	903	13	12	1	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/1	c0004	903	4	1	0	0	0	2	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	c0005	903	3	3	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	c0006	903	2	2	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	c0007	903	1	0	0	1	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B11_chr4_87331515_87396188	0/0	c0008	903	1	1	0	0	0	0	copy fasta	HSD17B11	chr4	87331515	87396188
HSD17B12_chr11_43675738_43861615	1/0	c0001	939	151	45	20	58	8	19	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/1	c0002	939	98	34	24	27	5	7	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	c0003	939	24	3	10	0	3	8	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	c0004	939	3	3	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	c0005	939	2	0	2	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	c0006	939	1	0	0	1	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B12_chr11_43675738_43861615	0/0	c0007	939	1	1	0	0	0	0	copy fasta	HSD17B12	chr11	43675738	43861615
HSD17B13_chr4_87298794_87327882	1/1	c0001	903	388	55	70	203	17	41	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0002	902	23	22	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0003	903	9	8	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0004	902	5	5	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0005	903	3	3	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0006	903	3	2	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0007	903	3	0	2	0	1	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0008	903	2	0	0	2	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0009	903	2	2	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0010	903	1	0	0	0	0	1	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0011	903	1	0	1	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0012	903	1	1	0	0	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B13_chr4_87298794_87327882	0/0	c0013	903	1	0	0	1	0	0	copy fasta	HSD17B13	chr4	87298794	87327882
HSD17B14_chr19_48808018_48841491	1/1	c0001	813	264	37	48	134	10	33	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0002	813	105	56	15	23	2	9	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0003	813	13	1	8	0	3	1	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0004	813	3	0	1	0	1	1	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0005	813	2	2	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0006	813	2	0	2	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0007	813	1	0	1	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0008	813	1	0	0	1	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0009	813	1	1	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0010	813	1	0	1	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B14_chr19_48808018_48841491	0/0	c0011	813	1	1	0	0	0	0	copy fasta	HSD17B14	chr19	48808018	48841491
HSD17B1_chr17_42547923_42560214	0/0	c0000	0	1	1	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0001	987	204	27	40	98	9	30	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	1/1	c0002	987	196	45	36	89	9	15	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0003	987	8	8	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0004	987	4	4	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0005	987	4	4	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0006	987	3	0	0	3	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0007	987	1	0	0	0	0	1	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B1_chr17_42547923_42560214	0/0	c0008	987	1	1	0	0	0	0	copy fasta	HSD17B1	chr17	42547923	42560214
HSD17B2_chr16_82030253_82103534	1/1	c0001	1164	321	75	47	147	12	38	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0002	1164	13	7	1	5	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0003	1164	9	0	0	9	0	0	copy fasta	HSD17B2	chr16	82030253	82103534