JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSD17B2_chr16_82030253_82103534	0/0	c0004	1164	7	0	0	7	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0005	1164	4	4	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0006	1164	4	2	1	1	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0007	1164	2	2	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0008	1164	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0009	1164	1	0	0	1	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0010	1164	1	1	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0011	1164	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0012	1164	1	0	1	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B2_chr16_82030253_82103534	0/0	c0013	1164	1	1	0	0	0	0	copy fasta	HSD17B2	chr16	82030253	82103534
HSD17B3_chr9_96230306_96307176	1/1	c0001	933	292	68	64	108	11	39	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0002	933	58	5	7	39	1	6	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0003	933	15	0	0	11	0	4	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0004	933	2	0	1	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0005	933	1	0	0	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0006	933	1	0	0	0	0	1	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0007	933	1	0	1	0	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0008	933	1	0	1	0	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0009	933	1	0	0	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0010	933	1	1	0	0	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B3_chr9_96230306_96307176	0/0	c0011	933	1	0	0	1	0	0	copy fasta	HSD17B3	chr9	96230306	96307176
HSD17B4_chr5_119447497_119547332	1/0	c0001	2211	165	35	30	78	6	15	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/1	c0002	2211	93	4	13	59	8	8	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0003	2211	42	11	9	19	0	3	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0004	2211	35	20	7	1	2	5	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0005	2211	10	0	0	10	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0006	2211	6	6	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0007	2211	6	6	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0008	2211	5	3	2	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0009	2211	3	3	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0010	2211	3	0	1	2	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0011	2211	2	0	2	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0012	2211	2	0	1	0	0	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0013	2211	2	0	0	2	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0014	2211	1	0	0	1	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0015	2211	1	0	1	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0016	2211	1	0	0	0	0	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0017	2211	1	0	0	0	0	1	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0018	2211	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B4_chr5_119447497_119547332	0/0	c0019	2211	1	1	0	0	0	0	copy fasta	HSD17B4	chr5	119447497	119547332
HSD17B6_chr12_56758324_56792790	1/1	c0001	954	356	90	72	138	18	36	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	c0002	954	1	1	0	0	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	c0003	954	1	1	0	0	0	0	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	c0004	954	1	0	0	0	0	1	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B6_chr12_56758324_56792790	0/0	c0005	954	1	0	0	0	0	1	copy fasta	HSD17B6	chr12	56758324	56792790
HSD17B7_chr1_162785702_162817823	1/1	c0001	1026	279	58	51	120	12	36	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0002	1026	72	13	21	31	3	4	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0003	1026	44	11	4	26	1	2	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0004	1026	14	0	0	14	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0005	1026	5	5	0	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823