JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSD17B7_chr1_162785702_162817823	0/0	c0006	1026	4	3	1	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0007	1026	1	0	1	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	c0008	1026	1	0	0	1	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B8_chr6_33199655_33211831	0/1	c0001	786	382	93	75	158	16	39	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0002	786	7	0	0	7	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0003	786	3	3	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0004	786	2	0	0	1	0	1	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0005	786	1	0	0	1	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0006	786	1	0	0	1	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0007	786	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0008	786	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0009	786	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0010	786	1	1	0	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0011	786	1	0	1	0	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0012	786	1	0	0	0	0	1	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	c0013	786	1	0	0	0	0	1	copy fasta	HSD17B8	chr6	33199655	33211831
HSD3B1_chr1_119502210_119520054	0/0	c0001	1122	157	5	37	97	4	14	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0002	1122	135	44	13	58	4	16	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	1/1	c0003	1122	57	4	16	18	8	9	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0004	1122	29	29	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0005	1122	17	7	3	3	0	4	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0006	1122	6	3	1	2	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0007	1122	3	3	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0008	1122	2	0	0	2	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0009	1122	2	2	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0010	1122	1	0	0	0	0	1	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	c0011	1122	1	1	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B2_chr1_119410150_119428034	1/0	c0001	1119	422	78	65	217	17	44	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0002	1119	7	7	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0003	1119	4	4	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0004	1119	2	2	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0005	1119	2	0	0	1	1	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0006	1119	1	1	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/1	c0008	1119	1	0	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0009	1119	1	0	0	1	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	c0010	1119	1	0	1	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B7_chr16_30980207_30994147	0/1	c0001	1110	145	19	37	66	11	11	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	1/0	c0002	1110	122	41	20	26	3	31	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0003	1110	32	31	1	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0004	1110	4	0	2	0	2	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0005	1110	3	0	0	0	0	3	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0006	1110	2	1	1	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0007	1110	2	1	1	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0008	1110	1	0	0	1	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0009	1110	1	1	0	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0010	1110	1	0	0	0	0	1	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSDL1_chr16_84117141_84150177	1/1	c0001	993	328	70	60	152	11	33	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	c0002	993	108	24	18	53	5	8	copy fasta	HSDL1	chr16	84117141	84150177