JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSFX1_chrX_149769068_149781867	0/0	c0008	1272	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0009	1272	1	0	0	0	1	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0010	1272	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0011	1272	1	1	0	0	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0012	1272	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0014	1272	1	0	0	0	0	1	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0015	1272	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0016	1273	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX1_chrX_149769068_149781867	0/0	c0017	1274	1	0	0	1	0	0	copy fasta	HSFX1	chrX	149769068	149781867
HSFX2_chrX_149587512_149600314	0/0	c0001	1272	122	10	16	71	4	21	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0002	1272	118	39	32	37	5	5	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0003	1272	7	7	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0004	1272	6	6	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0005	1272	4	4	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0006	1272	3	2	1	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0007	1272	3	0	0	3	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0008	1272	2	0	0	2	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0009	1268	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0010	1271	1	0	1	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0011	1262	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0012	1272	1	1	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0013	1270	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0014	1273	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0015	1272	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0016	1272	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0017	1272	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0018	1272	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0019	1271	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0020	1272	1	0	0	1	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0021	1272	1	0	0	0	0	1	copy fasta	HSFX2	chrX	149587512	149600314
HSFX2_chrX_149587512_149600314	0/0	c0022	1272	1	1	0	0	0	0	copy fasta	HSFX2	chrX	149587512	149600314
HSFX3_chrX_149543210_149554924	1/1	c0001	1002	312	67	57	145	13	28	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0002	1002	4	0	0	0	0	4	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0003	1002	3	3	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0004	1002	3	3	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0005	1002	2	1	1	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0006	1002	2	1	0	1	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0007	1002	2	0	0	0	0	2	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0008	1000	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX3_chrX_149543210_149554924	0/0	c0011	1005	1	0	0	1	0	0	copy fasta	HSFX3	chrX	149543210	149554924
HSFX4_chrX_149924573_149936287	1/1	c0001	1002	260	47	55	116	11	29	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0002	1002	18	16	2	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0003	1002	8	6	0	2	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0004	1002	4	0	0	4	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0005	1002	1	0	0	0	0	1	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0006	938	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287
HSFX4_chrX_149924573_149936287	0/0	c0007	1002	1	1	0	0	0	0	copy fasta	HSFX4	chrX	149924573	149936287