JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSP90AB1_chr6_44242101_44258883	0/0	c0009	2175	1	0	0	1	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0010	2175	1	0	0	0	1	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0011	2175	1	0	0	0	0	1	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0012	2175	1	0	0	1	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0013	2175	1	0	0	1	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90AB1_chr6_44242101_44258883	0/0	c0014	2175	1	0	0	1	0	0	copy fasta	HSP90AB1	chr6	44242101	44258883
HSP90B1_chr12_103925410_103952926	0/0	c0001	2412	216	50	35	101	7	23	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	1/0	c0002	2412	133	44	22	36	6	24	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0003	2409	69	1	10	53	2	3	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0004	2409	15	0	0	15	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0005	2412	7	0	6	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/1	c0006	2412	4	0	1	0	2	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0007	2412	3	0	2	0	1	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0008	2412	3	0	2	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0009	2412	2	2	0	0	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0010	2412	1	1	0	0	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0011	2412	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0012	2409	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0013	2409	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0014	2412	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSP90B1_chr12_103925410_103952926	0/0	c0015	2412	1	0	0	1	0	0	copy fasta	HSP90B1	chr12	103925410	103952926
HSPA12A_chr10_116666192_116747566	1/1	c0001	2028	298	77	51	125	10	33	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0002	2028	4	0	0	4	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0003	2028	3	0	2	0	0	1	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0004	2028	2	0	0	2	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0005	2028	2	0	1	0	1	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0006	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0007	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0008	2028	1	0	1	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0009	2028	1	0	0	0	1	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0010	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0011	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0012	2028	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0013	2028	1	0	1	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0014	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0015	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	c0016	2028	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12B_chr20_3727685_3758111	0/0	c0001	2061	190	36	34	87	13	20	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	1/0	c0002	2061	130	18	20	72	4	15	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0003	2061	51	0	18	23	0	10	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0004	2061	21	19	0	0	0	2	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0005	2061	4	4	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0006	2061	3	3	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0007	2061	3	0	0	1	0	2	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0008	2061	2	2	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0009	2061	2	2	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/1	c0010	2061	2	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0011	2061	2	2	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0012	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0013	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111