Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA6_chr17_69073702_69146895	0/0	c0003	4854	28	24	4	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0004	4854	24	0	10	11	0	3	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0005	4854	19	6	5	5	1	2	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0006	4854	9	7	0	2	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0007	4854	9	6	3	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0008	4854	4	0	0	4	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0009	4854	3	3	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0010	4854	3	3	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0011	4854	2	2	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0012	4854	2	0	2	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0013	4854	2	2	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0014	4854	2	0	0	2	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0015	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0016	4854	1	0	1	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0017	4854	1	0	0	0	0	1	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0018	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0019	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0020	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0021	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0022	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0023	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0024	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0025	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0026	4854	1	0	0	1	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0027	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	1/0	c0028	4854	1	0	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0029	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0030	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA6_chr17_69073702_69146895	0/0	c0031	4854	1	1	0	0	0	0	copy fasta	ABCA6	chr17	69073702	69146895
ABCA7_chr19_1035107_1070572	0/0	c0001	6441	5	0	1	4	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	1/0	c0002	6441	2	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0003	6441	2	0	0	0	1	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0004	6441	2	1	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0005	6441	2	2	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0006	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0007	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0008	6441	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0009	6441	1	0	0	0	1	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0010	6441	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/1	c0011	6441	1	0	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0012	6441	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0013	6441	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0014	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0015	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0016	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0017	6441	1	0	1	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0018	6441	1	0	0	0	0	1	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0019	6441	1	0	0	1	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0020	6441	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572
ABCA7_chr19_1035107_1070572	0/0	c0021	6441	1	1	0	0	0	0	copy fasta	ABCA7	chr19	1035107	1070572