JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH18A1_chr10_95600941_95661711	0/0	c0011	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0012	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0013	2388	1	0	0	0	0	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0014	2388	1	0	0	0	1	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0015	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0016	2388	1	0	1	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	c0017	2388	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH1A1_chr9_72895671_72958053	1/1	c0001	1506	201	74	36	66	6	17	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	c0002	1506	98	8	18	50	6	16	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	c0003	1506	4	0	0	4	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	c0004	1506	2	2	0	0	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	c0005	1506	1	0	0	0	0	1	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A2_chr15_57948429_58070711	1/0	c0001	1557	167	58	27	57	6	18	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/1	c0002	1557	136	29	30	56	4	16	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	c0003	1557	20	7	0	13	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	c0004	1557	2	1	1	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/0	c0005	1557	1	1	0	0	0	0	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A3_chr15_100874831_100921626	1/1	c0001	1539	343	61	68	168	15	29	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0002	1539	64	37	5	21	0	1	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0003	1539	2	0	0	0	0	2	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0004	1539	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0005	1539	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0006	1539	1	0	0	0	1	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0007	1539	1	0	1	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	c0008	1539	1	1	0	0	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1B1_chr9_38387702_38403661	0/1	c0001	1554	167	26	30	75	9	26	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0002	1554	127	11	18	73	6	19	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0003	1554	126	30	22	70	0	4	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0004	1554	21	19	2	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	1/0	c0005	1554	13	8	4	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0006	1554	12	0	8	4	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0007	1554	3	1	0	0	2	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0008	1554	3	0	0	3	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0009	1554	2	0	0	2	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0010	1554	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0011	1554	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0012	1554	1	0	1	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0013	1554	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0014	1554	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0015	1554	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0016	1554	1	0	0	0	1	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0017	1554	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0018	1554	1	0	0	0	0	1	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	c0019	1554	1	0	1	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1L1_chr3_126098570_126185586	1/1	c0001	2709	124	14	22	64	10	12	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0002	2709	44	4	2	33	2	3	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0003	2709	39	4	5	23	0	7	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0004	2709	20	5	10	4	0	1	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0005	2709	16	15	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0006	2709	9	2	5	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586