JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPA12B_chr20_3727685_3758111	0/0	c0014	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0015	2061	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0016	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0017	2061	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0018	2061	1	0	0	0	0	1	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0019	2061	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0020	2061	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0021	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0022	2061	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0023	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0024	2061	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	c0025	2061	1	0	0	0	1	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA13_chr21_14366115_14388146	1/1	c0001	1416	388	89	68	175	12	42	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0002	1416	7	7	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0003	1416	3	0	0	0	0	3	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0004	1416	3	0	0	3	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0005	1416	2	0	0	2	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0006	1416	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0007	1416	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0008	1416	1	1	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0009	1416	1	0	0	0	0	1	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	c0010	1416	1	1	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA14_chr10_14833306_14876741	1/1	c0001	1530	368	92	56	172	8	38	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	c0002	1530	2	0	0	0	0	2	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	c0003	1530	2	0	2	0	0	0	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	c0004	1530	1	1	0	0	0	0	copy fasta	HSPA14	chr10	14833306	14876741
HSPA14_chr10_14833306_14876741	0/0	c0005	1530	1	1	0	0	0	0	copy fasta	HSPA14	chr10	14833306	14876741
HSPA1A_chr6_31810543_31822942	0/0	c0000	0	1	0	0	1	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/1	c0001	1926	274	46	61	127	12	27	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0002	1926	69	41	15	3	2	8	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0003	1926	44	2	5	27	2	8	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0004	1926	12	0	0	12	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0005	1926	5	0	3	1	0	1	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0006	1926	4	0	0	2	1	1	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0007	1926	3	2	0	0	0	1	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0008	1926	2	0	1	0	1	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0009	1926	2	0	0	0	0	2	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0010	1926	1	1	0	0	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0011	1926	1	0	1	0	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	c0012	1937	1	0	0	1	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1B_chr6_31822738_31835254	0/1	c0001	1926	114	1	20	69	7	16	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0002	1926	89	18	28	33	2	8	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0003	1926	76	18	12	30	4	12	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0004	1926	54	24	9	16	4	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0005	1926	27	10	2	13	1	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0006	1926	13	11	2	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0007	1926	11	6	4	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0008	1926	7	0	0	7	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0009	1926	6	2	0	4	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0010	1926	5	1	3	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254