JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPA1B_chr6_31822738_31835254	0/0	c0011	1926	5	0	0	0	0	5	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0012	1926	4	3	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0013	1926	2	0	0	2	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0014	1926	1	0	0	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0015	1926	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0016	1926	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0017	1926	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0018	1875	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0019	1926	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0020	1926	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	c0021	1926	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1L_chr6_31804619_31820283	0/0	c0001	1926	165	52	45	40	8	20	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/1	c0002	1926	123	1	20	77	8	16	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0003	1926	47	1	5	33	1	7	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0004	1926	35	20	8	4	1	2	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0005	1926	20	11	2	6	0	1	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0006	1926	13	0	0	13	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0007	1926	12	0	3	9	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0008	1926	5	1	0	4	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0009	1926	2	2	0	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0010	1926	2	0	0	2	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0011	1926	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0012	1926	1	0	1	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0013	1926	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0014	1926	1	1	0	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	c0015	1926	1	1	0	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA2_chr14_64535741_64548237	0/0	c0001	1920	224	28	37	124	12	23	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	1/1	c0002	1920	123	50	25	31	1	14	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0003	1920	9	7	2	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0004	1920	7	0	2	0	1	4	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0005	1920	5	1	2	0	0	2	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0006	1920	3	1	1	0	0	1	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0007	1920	2	1	1	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0008	1920	1	1	0	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0009	1920	1	0	0	1	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	c0010	1920	1	1	0	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA4L_chr4_127777322_127845733	0/0	c0001	2520	213	49	30	116	4	14	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	1/0	c0002	2520	93	15	13	50	5	9	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0003	2520	15	14	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/1	c0004	2520	6	0	4	0	1	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0005	2520	4	4	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0006	2520	3	3	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0007	2520	2	0	2	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0008	2520	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0009	2520	1	0	0	0	0	1	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0010	2520	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	c0011	2520	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4_chr5_133047013_133111449	1/1	c0001	2523	279	59	52	134	8	24	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0002	2523	62	16	15	19	4	8	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0003	2523	4	1	2	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449