JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPA4_chr5_133047013_133111449	0/0	c0004	2523	4	4	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0005	2523	3	0	0	0	0	3	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0006	2523	2	2	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0007	2523	2	1	1	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0008	2523	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0009	2523	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0010	2523	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0011	2523	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0012	2523	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0013	2523	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0014	2523	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	c0015	2523	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA5_chr9_125229853_125246343	1/1	c0001	1965	396	92	59	184	18	41	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	c0002	1965	3	0	0	3	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	c0003	1965	2	0	0	2	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	c0004	1965	1	0	1	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	c0005	1965	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	c0006	1965	1	0	0	0	0	1	copy fasta	HSPA5	chr9	125229853	125246343
HSPA6_chr1_161519540_161531894	0/1	c0001	1932	240	43	34	134	8	20	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	1/0	c0002	1932	87	26	21	21	7	11	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0003	1932	65	0	3	55	0	7	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0004	1932	30	7	6	11	1	5	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0005	1932	9	2	4	3	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0006	1932	7	7	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0007	1932	3	3	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0008	1932	3	3	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0009	1932	2	0	0	0	0	2	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0010	1932	2	2	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0011	1932	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0012	1932	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0013	1932	1	0	0	0	0	1	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0014	1932	1	0	1	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0015	1932	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0016	1932	1	1	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0017	1932	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	c0018	1932	1	0	1	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA8_chr11_123052489_123067136	1/0	c0001	1941	201	32	49	78	12	29	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/1	c0002	1941	125	17	14	86	1	6	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0003	1941	77	34	13	18	3	9	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0004	1941	4	0	0	0	0	4	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0005	1941	3	2	1	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0006	1941	2	2	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0007	1941	2	2	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0008	1941	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0009	1941	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0010	1952	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0011	1941	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0012	1941	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0013	1941	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0014	1941	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136