JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPA8_chr11_123052489_123067136	0/0	c0015	1941	1	0	1	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0016	1941	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	c0017	1941	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA9_chr5_138548756_138580401	0/1	c0001	2040	124	32	19	54	4	14	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	1/0	c0002	2040	114	22	36	34	5	16	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	c0003	2040	59	36	11	1	1	10	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	c0004	2040	2	0	0	2	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	c0005	2040	1	1	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	c0006	2040	1	1	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	c0007	2040	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPB1_chr7_76297673_76309292	0/0	c0001	618	410	97	72	184	16	41	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0002	618	3	0	0	3	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0003	618	1	0	0	1	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0004	618	1	1	0	0	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0005	618	1	0	0	0	0	1	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0006	618	1	0	0	1	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	c0007	618	1	0	0	1	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB2_chr11_111907734_111919093	1/1	c0001	549	372	79	75	168	7	41	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	c0002	549	19	12	3	1	1	2	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	c0003	549	1	0	0	1	0	0	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	c0004	549	1	0	0	0	0	1	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	c0005	549	1	1	0	0	0	0	copy fasta	HSPB2	chr11	111907734	111919093
HSPB3_chr5_54450699_54461377	1/0	c0001	453	216	26	42	124	2	21	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/1	c0002	453	197	29	34	94	13	26	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	c0003	453	42	34	4	0	3	1	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	c0004	453	3	3	0	0	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	c0005	453	2	2	0	0	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	c0006	453	1	0	0	1	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB3_chr5_54450699_54461377	0/0	c0007	453	1	0	0	1	0	0	copy fasta	HSPB3	chr5	54450699	54461377
HSPB6_chr19_35749566_35762029	1/1	c0001	483	409	94	71	182	14	46	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	c0002	483	2	0	2	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	c0003	483	2	1	1	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	c0004	483	1	1	0	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB7_chr1_16009029_16023043	0/0	c0001	513	232	62	29	107	7	27	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	1/1	c0002	513	139	21	39	51	9	17	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0003	513	6	6	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0004	513	3	3	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0005	513	2	0	2	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0006	513	2	0	0	2	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0007	513	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0008	513	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0009	513	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0010	513	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0011	513	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0012	513	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0013	513	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	c0014	513	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB8_chr12_119173931_119199746	1/1	c0001	591	381	61	76	194	12	36	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	c0002	591	24	20	2	2	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	c0003	591	7	7	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746