JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPB8_chr12_119173931_119199746	0/0	c0004	591	5	5	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	c0005	591	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB9_chr17_42117804_42128352	1/1	c0001	480	185	21	43	85	10	24	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0002	480	122	52	18	32	8	12	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0003	480	13	6	0	5	0	2	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0004	480	5	5	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0005	480	4	4	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0006	480	2	0	0	0	0	2	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0007	377	1	0	1	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0008	480	1	1	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPB9_chr17_42117804_42128352	0/0	c0009	480	1	1	0	0	0	0	copy fasta	HSPB9	chr17	42117804	42128352
HSPBAP1_chr3_122734999_122798831	1/1	c0001	1467	265	43	52	118	11	39	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0002	1470	35	3	5	24	0	3	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0003	1470	18	17	1	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0004	1467	12	4	0	4	0	4	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0005	1467	10	2	7	0	1	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0006	1470	3	0	3	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0007	1467	1	0	0	1	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0009	1467	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0010	1470	1	0	0	1	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0012	1467	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	c0013	1467	1	1	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBP1_chr19_55257223_55285110	0/0	c0001	1089	198	59	37	77	5	20	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	1/1	c0002	1080	96	28	21	18	9	18	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0003	1080	5	0	0	0	0	5	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0004	1089	3	3	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0005	1089	2	0	0	2	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0006	1080	1	0	0	0	0	1	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0007	1089	1	0	1	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0009	1089	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0010	1080	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0011	1080	1	0	1	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0012	1080	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0013	1080	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0014	1080	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	c0015	1089	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPD1_chr2_197481584_197504840	0/0	c0001	1722	160	43	32	55	6	24	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	1/0	c0002	1722	125	13	29	70	2	10	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/1	c0003	1722	61	6	11	37	5	1	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0004	1722	16	15	1	0	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0005	1722	8	7	1	0	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0006	1722	8	0	0	8	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0007	1722	4	4	0	0	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0008	1722	4	0	0	4	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0009	1722	3	0	0	3	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0010	1722	2	0	0	2	0	0	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/0	c0011	1722	1	0	0	1	0	0	copy fasta	HSPD1	chr2	197481584	197504840