JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPG2_chr1_21817244_21942310	0/0	c0095	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0096	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0097	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0098	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0099	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0100	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0101	13176	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0102	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0103	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0104	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0105	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0106	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0107	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0108	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0109	13176	1	0	0	0	1	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0110	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0111	13176	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0112	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0113	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0114	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0115	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0116	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0117	13176	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0118	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0119	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0120	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0121	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0122	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0123	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0124	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0125	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0126	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0127	13176	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0128	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0129	13176	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0130	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0131	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0132	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0133	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0134	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0135	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0136	13176	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0137	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	c0138	13176	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPH1_chr13_31129973_31166904	1/1	c0001	2577	325	67	49	167	11	29	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0002	2577	51	17	17	3	7	7	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0003	2577	6	0	6	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0004	2577	3	3	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0005	2577	2	0	2	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0006	2577	2	2	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904