JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HSPH1_chr13_31129973_31166904	0/0	c0007	2577	2	0	0	2	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0008	2577	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0009	2577	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0010	2577	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0011	2577	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	c0012	2577	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HTATIP2_chr11_20358714_20388782	0/1	c0001	729	251	55	51	95	16	33	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	1/0	c0002	729	165	40	18	103	0	3	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	c0003	729	1	0	1	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	c0004	729	1	0	0	1	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	c0005	729	1	1	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	c0006	729	1	0	0	1	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATSF1_chrX_136492592_136517346	1/1	c0001	2268	190	32	32	96	5	23	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0002	2268	37	27	3	7	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0003	2268	20	0	0	20	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0004	2268	20	0	12	5	1	2	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0005	2268	2	0	0	0	0	2	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0006	2268	2	0	2	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0007	2268	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0008	2268	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0009	2268	1	0	0	0	1	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0010	2268	1	1	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	c0011	2268	1	0	0	0	0	1	copy fasta	HTATSF1	chrX	136492592	136517346
HTD2_chr3_58301520_58325193	1/1	c0001	507	361	89	79	138	10	43	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	c0002	507	4	4	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	c0003	507	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	c0004	507	1	0	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	c0005	507	1	0	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTN1_chr4_70045438_70063848	1/1	c0001	174	427	89	74	198	18	46	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	c0002	174	10	8	2	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	c0003	174	2	0	0	2	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	c0004	174	1	1	0	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN3_chr4_70023459_70041538	1/1	c0001	156	326	68	54	151	17	34	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	c0002	156	55	0	15	35	1	4	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	c0003	156	17	15	2	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	c0004	156	10	8	2	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	c0005	156	4	3	1	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTR1A_chr5_63952874_63967445	1/1	c0001	1269	351	65	71	156	16	41	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0002	1269	41	31	1	9	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0003	1269	18	1	6	10	0	1	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0004	1269	8	0	0	8	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0005	1269	6	0	0	6	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0006	1269	2	0	1	0	1	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0007	1269	2	0	0	2	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0009	1269	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0010	1269	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0011	1269	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0012	1269	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0013	1269	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445