JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTR1A_chr5_63952874_63967445	0/0	c0014	1269	1	0	0	0	1	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	c0015	1269	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1B_chr6_77455924_77468491	1/1	c0001	1173	263	72	36	109	15	29	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0002	1173	177	24	31	108	3	11	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0003	1173	2	0	2	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0004	1173	1	0	1	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0005	1173	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0006	1173	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	c0007	1173	1	0	0	1	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1D_chr1_23186895_23222502	1/1	c0001	1134	254	69	48	109	8	18	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0002	1134	91	14	20	39	2	16	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0003	1134	3	3	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0004	1134	2	0	0	2	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0005	1134	2	0	0	0	0	2	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0006	1134	1	0	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0007	1134	1	0	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	c0009	1134	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1E_chr6_86932528_87021679	1/1	c0001	1098	289	68	40	142	7	30	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0002	1098	5	0	0	5	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0003	1098	2	0	1	0	1	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0004	1098	1	0	0	1	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0005	1098	1	0	1	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1F_chr3_87787706_87998839	1/1	c0001	1101	247	72	45	94	10	24	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	c0002	1101	2	1	1	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	c0003	1101	1	1	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR2A_chr13_46826546_46902053	1/1	c0001	1416	183	35	41	79	6	20	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0002	1416	119	32	14	60	5	8	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0003	1416	10	7	2	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0004	1416	8	0	1	1	2	4	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0005	1416	6	6	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0006	1416	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0007	1416	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0008	1416	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0009	1416	1	0	0	0	1	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0010	1416	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0011	1416	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0012	1416	1	0	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	c0013	1416	1	0	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2B_chr2_231103230_231130042	1/1	c0001	1446	389	67	61	204	12	43	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0002	1446	7	7	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0003	1446	5	5	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0004	1446	4	4	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0005	1446	3	3	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0006	1446	1	0	0	0	0	1	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0007	1446	1	0	0	1	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0008	1446	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0009	1446	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042