JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH1L1_chr3_126098570_126185586	0/0	c0007	2709	9	9	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0008	2709	8	5	3	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0009	2709	7	1	5	0	0	1	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0010	2709	6	4	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0011	2709	6	6	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0012	2709	6	4	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0013	2709	3	3	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0014	2709	3	1	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0015	2709	2	0	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0016	2709	2	0	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0017	2709	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0018	2709	2	0	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0019	2709	2	0	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0020	2709	2	0	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0021	2709	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0022	2709	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0023	2709	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0024	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0025	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0026	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0027	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0028	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0029	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0030	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0031	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0032	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0033	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0034	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0035	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0036	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0037	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0038	2709	1	0	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0039	2709	1	0	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0040	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0041	2709	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0042	2709	1	0	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	c0043	2709	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L2_chr12_105014790_105089458	1/0	c0001	2772	255	61	47	116	7	23	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/1	c0002	2772	91	19	16	33	3	19	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0003	2772	6	0	0	6	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0004	2772	5	0	0	5	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0005	2772	4	0	0	4	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0006	2772	4	0	0	4	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0007	2772	3	1	2	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0008	2772	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0009	2772	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0010	2772	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0011	2772	2	0	0	2	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0012	2772	2	0	0	2	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0013	2772	2	0	1	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458