JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTR2B_chr2_231103230_231130042	0/0	c0010	1446	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0011	1446	1	0	0	1	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0012	1446	1	1	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	c0013	1446	1	0	1	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2C_chrX_114579086_114915061	0/0	c0001	1377	131	25	21	63	5	17	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	1/1	c0002	1377	45	27	6	4	2	4	copy fasta	HTR2C	chrX	114579086	114915061
HTR3A_chr11_113970108_113995313	1/1	c0001	1437	273	44	61	124	11	31	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0002	1437	62	15	8	31	2	6	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0003	1437	47	11	5	25	0	6	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0004	1437	15	14	1	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0005	1437	10	0	1	8	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0006	1437	5	4	1	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0007	1437	3	3	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0008	1437	2	2	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0009	1437	1	0	1	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0010	1437	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0011	1437	1	0	0	0	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0012	1437	1	0	0	0	1	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0015	1437	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0017	1437	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0018	1437	1	0	0	0	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	c0019	1437	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3B_chr11_113899796_113954079	1/0	c0001	1326	205	39	30	102	8	25	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/1	c0002	1326	135	29	36	49	3	17	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0003	1326	53	2	5	44	0	2	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0004	1326	6	6	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0005	1326	5	5	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0006	1326	4	0	3	0	1	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0007	1326	4	4	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0008	1326	2	0	0	0	0	2	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0009	1326	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0010	1326	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0011	1326	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	c0012	1326	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3C_chr3_184048047_184065673	0/0	c0001	1344	198	26	37	109	4	22	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	1/1	c0002	1344	136	28	26	50	9	21	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0003	1344	63	5	14	33	5	6	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0004	1344	23	20	3	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0005	1344	7	5	0	1	0	1	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0006	1344	4	3	1	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0007	1344	2	2	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0008	1344	2	2	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0009	1344	2	0	2	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0010	1430	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0011	1344	1	0	0	1	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0012	1344	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	c0013	1344	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673