JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTR3C_chr3_184048047_184065673	0/0	c0014	1344	1	0	1	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3D_chr3_184026742_184044369	0/0	c0001	1215	123	16	25	74	1	7	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/1	c0002	1215	90	12	17	48	4	8	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	1/0	c0003	1215	72	11	22	9	7	22	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0004	1215	70	0	3	55	4	8	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0005	1215	39	34	4	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0006	1215	24	1	9	12	1	1	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0007	1215	5	4	1	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0008	1215	3	2	1	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0009	1215	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0010	1215	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0011	1215	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0012	1215	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0013	1215	2	0	0	2	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0014	1215	2	2	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0015	1215	2	0	0	0	0	2	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0016	1215	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0017	1215	1	0	0	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0018	1215	1	0	0	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0019	1215	1	0	1	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0020	1215	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0021	1215	1	0	0	1	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0022	1215	1	0	0	0	1	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0023	1215	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0024	1215	1	0	1	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	c0025	1215	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3E_chr3_184092064_184111995	0/1	c0001	1371	280	63	44	133	9	30	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0002	1371	106	12	24	51	5	14	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0003	1371	11	10	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0004	1371	6	1	3	2	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0005	1371	2	2	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0006	1371	2	2	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0007	1204	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0008	1371	1	0	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0010	1371	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0011	1371	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0012	1371	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0013	1371	1	0	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0014	1371	1	0	0	0	0	1	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0016	1371	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0017	1371	1	0	0	0	0	1	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0018	1371	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0019	1371	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	1/0	c0020	1371	1	0	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	c0021	1371	1	0	0	1	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR4_chr5_148476547_148659527	1/1	c0001	1167	290	74	36	141	10	27	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0002	1167	8	8	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0003	1167	4	4	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527