JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTR4_chr5_148476547_148659527	0/0	c0004	1167	2	0	1	0	0	1	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0005	1167	2	1	0	0	0	1	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0006	1167	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0008	1167	1	0	0	0	0	1	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	c0009	1167	1	0	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR5A_chr7_155065324_155092392	1/1	c0001	1074	298	71	56	126	12	31	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0002	1074	105	15	13	64	4	9	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0003	1074	11	0	7	0	2	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0004	1074	7	7	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0005	1074	2	2	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0006	1074	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0007	1074	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0008	1074	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0009	1074	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0010	1074	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0011	1074	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	c0012	1074	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR6_chr1_19659875_19685966	1/1	c0001	1323	263	58	61	109	8	25	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0002	1323	92	17	13	50	3	9	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0003	1323	13	5	3	0	1	4	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0004	1323	10	0	1	6	0	3	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0005	1323	4	4	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0006	1323	4	4	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0007	1323	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0008	1323	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0009	1323	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0010	1323	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0011	1323	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0012	1323	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0013	1323	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0014	1323	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0016	1323	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	c0017	1323	1	0	0	0	0	1	copy fasta	HTR6	chr1	19659875	19685966
HTR7_chr10_90735823_90863039	1/1	c0001	1440	380	79	65	187	8	39	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0002	1440	13	10	3	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0003	1440	4	4	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0004	1440	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0005	1440	1	1	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0006	1440	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0007	1440	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0008	1440	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0009	1440	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	c0010	1440	1	0	0	0	0	1	copy fasta	HTR7	chr10	90735823	90863039
HTRA1_chr10_122456553_122519907	1/0	c0001	1443	185	57	49	49	8	21	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/1	c0002	1443	101	22	16	54	4	4	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0003	1443	43	0	1	36	0	6	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0004	1443	10	1	4	0	4	1	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0005	1443	9	3	1	0	0	5	copy fasta	HTRA1	chr10	122456553	122519907