JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTRA1_chr10_122456553_122519907	0/0	c0006	1443	3	2	0	0	0	1	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0007	1443	3	0	0	3	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0008	1443	2	0	0	2	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0009	1443	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0010	1443	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0012	1443	1	0	1	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0013	1443	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	c0014	1443	1	0	0	1	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA2_chr2_74524933_74538319	1/1	c0001	1377	378	90	71	182	8	25	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	c0002	1377	8	8	0	0	0	0	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	c0003	1377	3	0	0	0	0	3	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	c0004	1377	2	0	0	0	0	2	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	c0005	1377	1	0	1	0	0	0	copy fasta	HTRA2	chr2	74524933	74538319
HTRA3_chr4_8264754_8312098	1/0	c0001	1362	367	88	67	150	15	46	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/1	c0002	1362	9	3	4	0	1	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0003	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0004	1362	1	0	0	0	0	1	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0005	1362	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0007	1362	1	0	1	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0008	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0009	1362	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0010	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0011	1362	1	0	0	0	0	1	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0012	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0013	1362	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA4_chr8_38969228_38993663	0/0	c0001	1431	331	58	72	155	13	33	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	1/1	c0002	1431	68	29	5	19	3	10	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0003	1431	9	0	3	0	2	4	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0004	1431	5	0	0	5	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0005	1431	4	4	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0006	1431	2	2	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0007	1431	2	1	1	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0008	1431	1	0	1	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0011	1431	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0012	1431	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0013	1431	1	0	0	0	0	1	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTT_chr4_3069681_3248957	0/0	c0001	9432	35	0	8	21	1	5	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0002	9423	24	0	1	21	0	2	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0003	9423	15	1	5	4	3	2	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0004	9435	12	0	4	8	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0005	9420	7	7	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0006	9429	7	0	1	5	1	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0007	9426	6	5	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0008	9417	6	0	5	0	1	0	copy fasta	HTT	chr4	3069681	3248957