JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HTT_chr4_3069681_3248957	0/0	c0109	9441	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0110	9441	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0111	9432	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0112	9432	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0113	9432	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0114	9432	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0115	9444	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0116	9444	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0117	9444	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0118	9441	1	0	0	0	1	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0119	9453	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0120	9456	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0121	9447	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0122	9447	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0123	9450	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0124	9450	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0125	9450	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0126	9462	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/1	c0127	9456	1	0	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	c0128	9429	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HUNK_chr21_31868020_32009064	1/1	c0001	2145	98	27	18	39	3	9	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0002	2145	95	30	13	37	4	11	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0003	2145	76	2	13	44	4	13	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0004	2145	13	12	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0005	2145	13	5	5	1	1	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0006	2145	6	0	0	5	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0007	2145	4	2	2	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0008	2145	4	4	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0009	2145	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0010	2145	2	1	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0011	2145	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0012	2145	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0013	2145	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0014	2145	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0015	2145	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0016	2145	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0017	2145	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0018	2145	1	0	0	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0019	2145	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0020	2145	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0021	2145	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0022	2145	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0023	2145	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	c0024	2145	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUS1B_chr6_650939_662100	0/1	c0001	837	290	34	64	144	12	35	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	1/0	c0002	837	53	45	3	3	1	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0003	837	45	0	5	33	1	6	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0004	837	22	1	5	13	2	1	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0005	837	4	2	1	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0006	837	3	3	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100