JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HUS1B_chr6_650939_662100	0/0	c0007	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0008	837	1	0	0	0	0	1	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0009	837	1	0	0	0	0	1	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0010	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0011	837	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0012	813	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0013	837	1	0	1	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0014	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0015	837	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0016	837	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0017	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0018	837	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0019	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0020	837	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	c0021	820	1	0	1	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1_chr7_47958288_47984615	1/0	c0001	843	212	55	35	85	8	28	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/1	c0002	843	158	32	31	75	5	14	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	c0003	843	30	4	0	25	1	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	c0004	843	6	6	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	c0005	843	2	0	2	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	c0006	843	1	0	0	1	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	c0007	843	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUWE1_chrX_53527096_53691719	0/1	c0001	13125	121	30	22	49	6	13	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0002	13125	54	2	17	19	5	11	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0003	13125	17	0	0	17	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0004	13125	4	4	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	1/0	c0005	13125	2	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0006	13125	2	0	0	2	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0007	13125	1	0	1	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0008	13125	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0009	13125	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0010	13125	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0011	13125	1	0	1	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0012	13127	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0013	13125	1	0	1	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0014	13125	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0015	13125	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0016	13126	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0017	13125	1	0	0	0	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0018	13125	1	0	0	0	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0019	13125	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	c0020	13125	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HVCN1_chr12_110643686_110694115	1/1	c0001	822	202	77	46	29	13	35	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0002	822	3	0	2	0	1	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0003	822	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0004	822	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0005	822	1	0	0	0	0	1	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0006	822	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	c0007	822	1	0	0	1	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HYAL1_chr3_50294893_50308574	1/1	c0001	1308	356	80	67	157	14	36	copy fasta	HYAL1	chr3	50294893	50308574