JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HYAL1_chr3_50294893_50308574	0/0	c0002	1308	10	0	0	10	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0003	1308	4	0	0	0	2	2	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0004	1308	3	3	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0005	1308	3	3	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0006	1308	2	2	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0007	1308	2	0	0	1	0	1	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0008	1310	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0009	1308	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0010	1308	1	0	1	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	c0011	1308	1	0	0	0	0	1	copy fasta	HYAL1	chr3	50294893	50308574
HYAL2_chr3_50312808_50327745	0/1	c0001	1422	170	58	38	47	8	18	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	c0002	1422	98	16	18	63	0	1	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	1/0	c0003	1422	81	10	14	32	10	14	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	c0004	1422	2	2	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	c0007	1422	1	0	0	0	0	1	copy fasta	HYAL2	chr3	50312808	50327745
HYAL3_chr3_50287832_50304405	1/1	c0001	1254	279	68	35	134	12	28	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0002	1254	92	16	37	26	4	9	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0003	1254	3	3	0	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0004	1254	1	0	0	1	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0005	1254	1	0	0	0	0	1	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL4_chr7_123840169_123882481	1/0	c0001	1446	329	82	55	146	10	35	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/1	c0002	1446	26	0	11	14	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0003	1446	24	14	4	0	1	5	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0004	1446	3	0	1	0	0	2	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0005	1446	3	0	1	2	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0006	1446	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0007	1456	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0008	1446	1	0	0	0	1	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0010	1446	1	0	1	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0011	1446	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0012	1446	1	0	1	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0013	1434	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	c0014	1446	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYCC1_chr7_22929211_23019130	1/1	c0001	1566	230	45	49	94	10	30	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0002	1566	144	32	20	77	3	12	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0003	1566	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0004	1566	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0005	1566	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0007	1566	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0008	1566	1	0	0	0	1	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0009	1566	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0010	1566	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	c0011	1566	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC2_chr2_200968718_201076671	1/1	c0001	1761	175	85	38	24	10	16	copy fasta	HYCC2	chr2	200968718	201076671