JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HYCC2_chr2_200968718_201076671	0/0	c0002	1761	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYDIN_chr16_70797084_71235722	0/1	c0001	15366	22	2	10	4	1	4	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0002	15366	11	0	3	5	0	3	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0003	15366	9	1	3	3	1	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0004	15366	9	9	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0005	15366	9	2	1	3	1	2	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0006	15366	5	0	0	5	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0007	15366	5	5	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0008	15366	4	4	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0009	15366	3	3	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0010	15366	3	3	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0011	15366	3	0	1	2	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0012	15366	3	1	2	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0013	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0014	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0015	15366	2	0	0	2	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0016	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0017	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0018	15366	2	0	2	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0019	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0020	15366	2	1	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0021	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0022	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0023	15366	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0024	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0025	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0026	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0027	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0028	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0029	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0030	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0031	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0032	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0033	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0034	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0035	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0036	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0037	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0038	15366	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0039	15366	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0040	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0041	15366	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0042	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0043	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0044	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0045	15366	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0046	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0047	15366	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0048	15366	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	c0049	15366	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722