JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH1L2_chr12_105014790_105089458	0/0	c0014	2772	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0015	2772	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0016	2772	1	0	1	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0017	2772	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0018	2772	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	c0019	2772	1	0	1	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH2_chr12_111761933_111822532	1/1	c0001	1554	305	84	52	125	6	36	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0002	1554	25	0	0	25	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0003	1554	4	0	0	0	0	4	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0004	1554	3	0	0	3	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0005	1554	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0006	1554	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0007	1554	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0008	1554	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	c0009	1554	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH3A1_chr17_19732989_19753298	0/0	c0001	1362	158	31	22	81	6	18	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0002	1362	107	2	33	53	4	15	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	1/1	c0003	1362	74	26	19	13	4	10	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0004	1362	28	1	3	23	1	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0005	1362	11	10	1	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0006	1362	11	0	0	11	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0007	1362	7	1	1	5	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0008	1362	5	5	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0009	1362	4	0	3	0	0	1	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0010	1362	2	0	0	2	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0011	1362	2	2	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0012	1362	2	2	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0013	1362	2	0	0	2	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0015	1362	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0016	1362	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0017	1362	1	0	1	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0018	1362	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0019	1362	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0020	1362	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0021	1362	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0022	1362	1	0	0	0	1	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0023	1362	1	0	1	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	c0024	1362	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A2_chr17_19643751_19682596	0/0	c0001	1458	286	43	49	161	12	21	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	1/1	c0002	1458	75	28	22	5	4	14	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	c0003	1458	2	2	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	c0004	1458	1	0	1	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	c0005	1458	1	1	0	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	c0006	1458	1	0	0	0	0	1	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3B1_chr11_68005327_68034276	1/1	c0001	1407	154	15	34	69	8	26	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0002	1407	78	12	14	37	6	9	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0003	1407	68	18	13	32	2	3	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0004	1407	16	4	0	9	0	3	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0005	1407	13	12	0	0	0	1	copy fasta	ALDH3B1	chr11	68005327	68034276