JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HYI_chr1_43445989_43458931	0/0	c0011	834	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	c0012	834	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	c0013	834	1	0	1	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	c0014	834	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	c0015	834	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	c0016	834	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYKK_chr15_78502577_78541645	1/1	c0001	1122	326	75	40	172	9	28	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0002	1122	67	10	19	23	2	13	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0003	1122	11	1	7	0	1	2	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0004	1122	2	2	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0005	1122	2	2	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0007	1122	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0008	1122	1	0	0	0	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	c0009	1122	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYLS1_chr11_125882668_125905646	1/1	c0001	900	298	65	56	140	8	27	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	c0002	900	131	28	18	63	6	16	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	c0003	900	3	3	0	0	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	c0004	900	2	0	0	0	0	2	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	c0005	900	1	0	0	0	0	1	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	c0006	900	1	0	0	1	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYOU1_chr11_119039188_119062205	0/0	c0001	3000	108	15	18	58	4	13	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/1	c0002	3000	102	32	24	28	2	15	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0003	3000	87	4	4	64	4	11	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	1/0	c0004	3000	41	4	13	17	4	2	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0005	3000	20	15	1	3	0	1	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0006	3000	14	13	1	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0007	3000	7	5	2	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0008	3000	5	0	0	5	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0009	3000	5	5	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0010	3000	4	0	0	4	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0011	3000	3	1	2	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0012	3000	2	2	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0013	3000	2	2	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0014	3000	2	0	0	2	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0015	3000	1	1	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0016	3000	1	1	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0017	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0018	3000	1	0	0	0	1	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0019	3000	1	0	0	0	1	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0020	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0021	3000	1	0	1	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0022	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0023	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0024	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0025	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	c0026	3000	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYPK_chr15_43795599_43809427	1/1	c0001	366	260	54	50	111	11	32	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	c0002	366	87	27	12	41	1	6	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	c0003	366	7	7	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427