JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HYPK_chr15_43795599_43809427	0/0	c0004	366	2	2	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
IAH1_chr2_9469551_9494742	1/1	c0001	747	331	89	70	119	15	36	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0002	747	3	0	2	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0003	747	1	0	0	0	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0004	747	1	0	0	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0005	747	1	0	0	0	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0006	747	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0007	747	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0008	747	1	0	0	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0009	747	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	c0010	747	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAPP_chr12_21367902_21384980	1/1	c0001	270	419	88	72	195	16	46	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	c0002	270	3	0	0	3	0	0	copy fasta	IAPP	chr12	21367902	21384980
IARS1_chr9_92205207_92298697	1/1	c0001	3789	248	55	48	105	12	26	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0002	3789	26	5	10	3	3	5	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0003	3789	19	18	1	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0004	3789	18	1	2	11	1	3	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0005	3789	8	0	0	8	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0006	3789	3	0	2	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0007	3789	2	2	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0008	3789	2	2	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0009	3789	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0010	3789	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0011	3789	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0012	3789	1	0	1	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0013	3789	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0014	3789	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0015	3789	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0016	3789	1	0	0	1	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0017	3789	1	0	0	0	0	1	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0018	3789	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0019	3789	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	c0020	3789	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS2_chr1_220089132_220153041	1/1	c0001	3039	307	56	59	148	12	30	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0002	3039	19	11	1	4	0	3	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0003	3039	11	10	1	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0004	3039	10	0	0	7	0	3	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0005	3039	5	5	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0006	3039	3	0	1	0	2	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0007	3039	2	2	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0008	3039	2	0	0	2	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0009	3039	2	0	0	2	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0010	3039	1	1	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0011	3039	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0012	3039	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0013	3039	1	1	0	0	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	c0014	3039	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IBA57_chr1_228160804_228187257	1/1	c0001	1071	215	70	28	100	4	11	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0002	1071	113	11	20	54	6	22	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0003	1071	56	3	22	14	6	11	copy fasta	IBA57	chr1	228160804	228187257