JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IBA57_chr1_228160804_228187257	0/0	c0004	1071	20	3	0	17	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0005	1071	2	2	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0006	1071	2	0	0	2	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0007	1071	2	2	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0008	1071	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0009	1071	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0010	1071	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0011	1071	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0012	1071	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	c0013	1071	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBSP_chr4_87794554_87817435	1/0	c0001	954	113	8	23	72	1	8	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0002	954	93	8	12	63	1	9	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0003	954	60	37	12	3	4	4	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/1	c0004	954	58	1	19	17	4	16	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0005	954	47	0	2	40	2	3	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0006	954	45	30	6	1	2	6	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0007	954	31	10	3	16	0	2	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0008	954	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0009	954	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0010	954	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0011	954	1	0	0	1	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0012	954	1	0	1	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0013	954	1	0	0	1	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	c0014	954	1	1	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBTK_chr6_82164987_82252744	1/1	c0001	4062	182	46	36	62	10	26	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0002	4062	92	20	19	41	2	10	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0003	4062	5	5	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0004	4062	4	3	0	1	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0005	4062	3	3	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0006	4062	3	3	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0007	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0008	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0009	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0010	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0011	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0012	4062	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	c0013	4062	1	0	1	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
ICA1L_chr2_202768176_202876766	1/1	c0001	1449	318	71	61	145	14	25	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0002	1449	5	5	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0003	1449	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0004	1449	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0005	1449	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0006	1449	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	c0007	1449	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1_chr7_8108184_8267167	1/1	c0001	1452	229	43	42	104	8	30	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0002	1452	35	30	3	0	0	2	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0003	1452	5	5	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0004	1452	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0005	1452	1	0	1	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0006	1452	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167