JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ICA1_chr7_8108184_8267167	0/0	c0007	1452	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	c0008	1452	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICAM1_chr19_10266120_10291615	1/1	c0001	1599	253	60	45	119	7	20	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0002	1599	144	16	29	67	7	25	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0003	1599	15	2	11	0	2	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0004	1599	8	7	0	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0005	1599	8	0	0	8	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0006	1599	7	7	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0007	1599	4	0	3	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0008	1599	3	3	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0009	1599	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0010	1599	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0011	1599	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0013	1599	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0014	1599	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0015	1599	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0016	1599	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0017	1599	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	c0018	1599	1	0	0	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM2_chr17_63997595_64025633	1/1	c0001	828	379	80	74	164	18	41	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	c0002	828	8	6	2	0	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	c0003	828	2	2	0	0	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	c0004	828	1	0	0	0	0	1	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	c0005	828	1	0	0	1	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	c0006	828	1	0	0	1	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM3_chr19_10328776_10344624	0/1	c0001	1644	217	39	31	120	5	21	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	1/0	c0002	1644	79	4	21	42	5	6	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0003	1644	52	23	13	12	1	3	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0004	1644	46	4	13	15	3	11	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0005	1644	13	10	0	0	2	1	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0006	1644	10	0	0	10	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0007	1644	5	3	0	0	0	2	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0008	1644	3	3	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0009	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0010	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0011	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0013	1644	1	0	0	0	0	1	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0014	1644	1	0	1	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0015	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0016	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0017	1644	1	0	0	0	1	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0018	1644	1	0	0	1	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0019	1644	1	0	0	0	0	1	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0020	1644	1	0	1	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0021	1644	1	0	0	0	1	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0022	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	c0023	1644	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM4_chr19_10281955_10293520	1/1	c0001	816	420	87	84	187	16	44	copy fasta	ICAM4	chr19	10281955	10293520