JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ICAM4_chr19_10281955_10293520	0/0	c0002	816	6	6	0	0	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	c0003	816	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	c0004	816	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	c0005	816	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	c0006	816	1	1	0	0	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM5_chr19_10284952_10301778	1/1	c0001	2775	184	39	31	84	5	23	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0002	2775	95	2	23	56	5	9	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0003	2775	69	36	10	17	3	3	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0004	2775	31	2	13	10	1	5	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0005	2776	11	2	2	6	0	1	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0006	2776	8	0	2	4	0	2	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0007	2776	6	1	1	2	1	1	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0008	2776	6	4	0	2	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0009	2775	4	2	1	0	1	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0010	2775	3	3	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0011	2775	2	1	1	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0012	2776	2	1	1	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0013	2775	1	0	0	1	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0014	2775	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0015	2775	1	0	1	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0016	2776	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0017	2761	1	0	0	1	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0018	2775	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0019	2776	1	0	1	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0020	2775	1	0	1	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0021	2775	1	0	0	1	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0022	2775	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	c0023	2775	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICE1_chr5_5417677_5495220	0/1	c0001	6801	115	20	22	51	9	12	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0002	6801	51	0	9	38	0	4	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	1/0	c0003	6801	50	4	13	19	5	8	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0004	6801	48	8	0	38	1	1	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0005	6801	15	0	7	8	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0006	6801	14	13	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0007	6801	14	14	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0008	6801	9	9	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0009	6801	6	0	4	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0010	6801	3	2	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0011	6801	3	0	1	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0012	6801	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0013	6801	2	0	0	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0014	6801	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0015	6801	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0016	6801	2	0	0	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0017	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0018	6801	1	0	0	0	0	1	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0019	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0020	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0021	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0022	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220