JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ICE1_chr5_5417677_5495220	0/0	c0023	6801	1	0	0	0	1	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0024	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0025	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0026	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0027	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0028	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0029	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0030	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0031	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0032	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0033	6801	1	0	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0034	6801	1	0	1	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0035	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0036	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0037	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0038	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0039	6801	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0040	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0041	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	c0042	6801	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE2_chr15_60414609_60484142	1/0	c0001	2949	133	63	30	25	7	7	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/1	c0002	2949	120	18	23	48	6	24	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0003	2949	3	3	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0004	2949	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0005	2949	2	0	2	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0006	2949	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0007	2949	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0008	2949	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0009	2949	1	0	0	1	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0010	2949	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0011	2949	1	0	0	0	1	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0012	2949	1	0	0	0	0	1	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0013	2949	1	0	1	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	c0014	2949	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICMT_chr1_6216193_6240964	1/1	c0001	855	335	88	57	134	14	40	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	c0002	855	7	7	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	c0003	855	4	3	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	c0004	855	3	0	0	3	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	c0005	855	2	0	0	2	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	c0006	855	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICOSLG_chr21_44217991_44245943	0/1	c0001	909	19	1	11	4	0	2	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	c0002	909	19	5	3	9	0	2	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	c0003	909	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	c0004	909	1	0	0	1	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	c0005	909	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOS_chr2_203931763_203966577	1/1	c0001	600	415	78	76	193	18	48	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	c0002	600	8	8	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	c0003	600	4	4	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	c0004	600	2	0	0	2	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	c0005	600	1	0	0	1	0	0	copy fasta	ICOS	chr2	203931763	203966577