JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ID1_chr20_31600289_31611510	1/1	c0001	468	196	19	47	89	9	30	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	c0002	468	93	65	21	0	3	4	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	c0003	468	7	1	6	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	c0004	468	1	0	0	1	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	c0005	468	1	1	0	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID2_chr2_8677056_8689461	1/1	c0001	405	388	90	72	162	16	46	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	c0002	405	6	6	0	0	0	0	copy fasta	ID2	chr2	8677056	8689461
ID3_chr1_23552926_23564501	0/1	c0001	360	370	76	62	175	15	41	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	1/0	c0002	360	31	0	19	5	3	3	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0003	360	19	17	2	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0004	360	6	0	0	6	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0005	360	4	3	1	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0006	360	2	2	0	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0007	360	1	0	1	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	c0008	360	1	0	1	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID4_chr6_19832370_19847197	1/1	c0001	486	464	94	84	217	18	49	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	c0002	486	2	2	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	c0003	486	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	c0004	486	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	c0005	486	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	c0006	486	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
IDE_chr10_92446684_92579093	1/1	c0001	3060	290	76	67	98	14	33	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0002	3060	13	0	4	9	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0003	3060	5	0	0	5	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0004	3060	3	0	0	3	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0005	3060	1	0	0	1	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0006	3060	1	0	0	0	0	1	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	c0007	3060	1	0	1	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDH1_chr2_208231229_208260071	1/1	c0001	1245	332	80	57	149	8	36	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0002	1245	12	2	5	3	2	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0003	1245	6	6	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0004	1245	3	3	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0005	1245	2	0	0	0	2	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0006	1245	1	0	0	1	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	c0008	1245	1	0	0	1	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH2_chr15_90078045_90107468	1/1	c0001	1359	334	53	79	137	16	47	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0002	1359	65	20	5	40	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0003	1359	17	16	0	0	0	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0004	1359	9	0	0	9	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0005	1359	4	0	0	4	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0006	1359	2	0	0	0	2	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0007	1359	2	2	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0008	1359	2	0	0	2	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0010	1359	1	1	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0011	1359	1	1	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0012	1359	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	c0013	1359	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH3A_chr15_78144362_78176945	1/0	c0001	1101	178	23	34	99	4	17	copy fasta	IDH3A	chr15	78144362	78176945