JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IDH3A_chr15_78144362_78176945	0/1	c0002	1101	174	49	34	60	6	24	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	c0003	1101	27	12	2	13	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	c0004	1101	4	0	0	4	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	c0005	1101	2	0	0	2	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	c0006	1101	1	0	0	0	0	1	copy fasta	IDH3A	chr15	78144362	78176945
IDH3B_chr20_2653395_2669216	1/1	c0001	1158	429	83	83	198	18	45	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0002	1158	4	4	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0003	1158	3	3	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0004	1158	1	0	0	0	0	1	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0005	1158	1	1	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0006	1158	1	1	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	c0007	1158	1	0	1	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3G_chrX_153780768_153799375	1/1	c0001	1182	280	68	54	115	11	30	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0002	1182	7	7	0	0	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0003	1182	4	0	0	4	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0004	1182	2	0	0	2	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0005	1183	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0007	1182	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0008	1183	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0009	1185	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	c0010	1182	1	1	0	0	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDI1_chr10_1034419_1054119	1/1	c0001	855	427	96	73	197	18	41	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0002	855	3	0	0	0	0	3	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0003	855	3	0	1	0	0	2	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0004	855	2	0	2	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0005	855	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0006	855	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	c0007	914	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI2_chr10_1013910_1030859	1/1	c0001	684	329	64	61	143	18	41	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0002	684	39	12	8	18	0	1	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0003	684	29	2	6	19	0	2	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0004	684	21	7	3	7	0	4	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0005	684	5	5	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0006	684	4	0	4	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0007	684	1	0	0	1	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0008	684	1	0	0	1	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0009	684	1	0	0	1	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0010	684	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0011	684	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0012	684	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	c0013	684	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDNK_chr9_83618143_83649123	1/0	c0001	564	304	88	51	114	14	36	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/1	c0002	564	21	1	7	6	2	4	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0003	564	2	2	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0004	564	1	0	0	0	0	1	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0005	564	1	0	0	0	0	1	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0006	564	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0007	564	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	c0008	564	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123