JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IDO1_chr8_39908891_39933790	1/1	c0001	1212	411	91	75	188	14	41	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0002	1212	4	4	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0003	1212	2	2	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0004	1212	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0005	1212	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0006	1212	1	0	0	0	0	1	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0007	1212	1	0	1	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	c0008	1212	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO2_chr8_39929651_40021392	0/0	c0001	1224	103	26	11	56	1	9	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/1	c0002	1224	98	19	25	34	3	16	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0003	1224	65	1	18	38	3	5	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0004	1224	21	8	3	9	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0005	1224	20	2	8	6	3	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0006	1224	13	8	4	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	1/0	c0007	1224	7	6	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0008	1224	7	0	0	4	0	3	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0009	1224	5	5	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0010	1224	5	5	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0011	1224	4	4	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0012	1224	3	3	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0014	1224	1	0	0	1	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0015	1224	1	0	0	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0016	1224	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0017	1224	1	0	1	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0018	1224	1	0	0	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0019	1224	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0020	1224	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	c0021	1224	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDS_chrX_149471988_149510306	1/1	c0001	1653	254	51	41	121	8	31	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0002	1653	29	16	10	0	2	1	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0003	1653	7	7	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0004	1653	4	4	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0005	1654	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0006	1653	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0007	1653	1	0	1	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0008	1679	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0009	1653	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0010	1653	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0011	1653	1	0	0	0	1	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0012	1653	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	c0013	1653	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDUA_chr4_982044_1009564	0/0	c0001	1962	113	21	7	68	3	14	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0002	1962	111	10	36	45	4	16	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0003	1962	42	1	16	19	6	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0004	1962	33	4	8	11	3	7	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0005	1962	21	14	3	2	1	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0006	1962	11	4	1	5	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0007	1962	11	0	4	6	1	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0008	1962	8	8	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564