JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH3B1_chr11_68005327_68034276	0/0	c0006	1407	8	8	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0007	1407	7	7	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0008	1407	6	0	0	6	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0009	1407	5	4	1	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0010	1407	3	0	0	3	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0011	1407	3	3	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0012	1407	2	2	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0013	1407	2	2	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0014	1407	2	0	0	0	0	2	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0015	1407	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0016	1407	1	0	0	1	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0017	1407	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0018	1407	1	0	0	1	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0019	1407	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0020	1407	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	c0021	1407	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B2_chr11_67657155_67679623	0/1	c0001	1158	254	29	51	120	13	40	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0002	1158	36	11	9	13	2	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0003	1158	16	8	0	8	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0004	1158	15	14	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0005	1158	14	0	0	14	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0006	1158	10	9	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0007	1158	8	8	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0008	1158	6	0	0	6	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0009	1158	3	3	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0010	1158	3	0	0	3	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0011	1158	3	3	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0012	1158	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0013	1158	2	1	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0014	1158	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0015	1158	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0016	1158	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0017	1158	1	0	0	0	1	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0018	1158	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0019	1158	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0020	1158	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0021	1158	1	0	0	1	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0022	1158	1	0	0	0	0	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0023	1158	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0024	1158	1	0	0	0	0	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	1/0	c0025	1158	1	0	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0026	1158	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0027	1158	1	0	0	1	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	c0028	1158	1	0	0	0	0	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH4A1_chr1_18866430_18907555	0/0	c0001	1692	153	30	37	63	10	13	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0002	1692	62	6	7	45	0	4	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	1/1	c0003	1692	49	2	6	32	1	6	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0004	1692	36	21	3	3	0	9	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0005	1692	27	2	2	18	1	4	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0006	1692	9	0	7	0	1	1	copy fasta	ALDH4A1	chr1	18866430	18907555