JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IDUA_chr4_982044_1009564	0/0	c0009	1962	8	0	2	4	0	2	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0010	1962	7	5	0	1	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0011	1962	5	3	1	0	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0012	1962	5	0	0	4	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0013	1962	5	5	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0014	1962	4	4	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0015	1962	4	0	1	3	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0016	1962	4	4	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0017	1962	3	3	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0018	1962	2	1	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0019	1962	2	2	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0020	1962	2	0	1	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0021	1962	2	2	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0022	1962	2	0	0	2	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0023	1962	2	0	0	2	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0024	1962	1	0	0	0	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0025	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0026	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0027	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0028	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0029	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0030	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0031	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0032	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0033	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0034	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0035	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0036	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0037	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0038	1962	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0039	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0040	1962	1	0	0	0	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0041	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	c0042	1962	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IER2_chr19_13145411_13159911	1/1	c0001	672	282	83	56	92	8	41	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0002	672	19	5	6	7	0	1	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0003	672	19	0	7	4	4	4	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0004	672	4	4	0	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0005	672	3	2	1	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0006	672	1	1	0	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0007	672	1	1	0	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	c0008	672	1	0	0	1	0	0	copy fasta	IER2	chr19	13145411	13159911
IER3IP1_chr18_47147834_47181364	1/1	c0001	249	373	77	71	171	16	36	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	c0002	249	2	2	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	c0003	249	1	0	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	c0004	249	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	c0005	249	1	0	0	1	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3_chr6_30738199_30749547	0/1	c0001	471	438	92	77	205	18	45	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	c0002	471	7	0	5	1	0	1	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	c0003	471	2	2	0	0	0	0	copy fasta	IER3	chr6	30738199	30749547