JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IER3_chr6_30738199_30749547	0/0	c0004	471	1	0	1	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	c0005	471	1	0	1	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER5L_chr9_129170552_129183261	1/1	c0001	1215	294	70	55	128	9	30	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0002	1215	76	11	15	26	7	17	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0003	1215	32	0	2	30	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0004	1215	6	5	1	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0005	1215	4	4	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0006	1206	3	2	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0007	1206	2	2	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0011	1215	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0012	1206	1	0	0	0	0	1	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0013	1215	1	0	1	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0014	1215	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0015	1215	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	c0016	1215	1	0	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5_chr1_181083700_181097900	0/0	c0001	984	172	41	47	58	8	18	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0002	984	142	25	23	69	4	21	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/1	c0003	984	23	4	1	12	2	3	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	1/0	c0004	984	13	10	2	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0005	984	11	10	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0006	984	7	7	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0007	984	2	0	0	0	0	2	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0008	984	1	0	0	1	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0009	984	1	0	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0010	984	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	c0011	984	1	0	1	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IFFO1_chr12_6534539_6561042	1/1	c0001	1716	415	82	80	195	12	44	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0002	1716	16	16	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0003	1716	1	0	0	0	0	1	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0004	1716	1	0	0	1	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0005	1716	1	0	0	0	0	1	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0006	1716	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0007	1716	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0008	1716	1	1	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	c0009	1716	1	1	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO2_chr1_18899280_18961676	1/1	c0001	1554	351	79	69	147	15	39	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0002	1554	5	0	4	0	1	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0003	1554	4	0	0	4	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0004	1554	4	4	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0005	1554	3	0	0	0	0	3	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0006	1554	3	3	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0007	1554	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0008	1554	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0009	1554	1	0	1	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	c0010	1554	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFI16_chr1_159004907_159060151	0/1	c0001	2358	132	7	38	58	7	21	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0002	2358	63	10	0	43	0	10	copy fasta	IFI16	chr1	159004907	159060151