JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFI16_chr1_159004907_159060151	0/0	c0003	2358	26	10	0	16	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0004	2358	22	21	0	1	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0005	2358	19	9	0	10	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	1/0	c0006	2358	11	10	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0007	2358	9	3	0	5	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0008	2358	8	7	1	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0009	2358	5	2	1	1	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0010	2190	5	1	2	0	2	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0011	2358	4	3	1	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0012	2358	2	0	0	2	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0013	2358	2	0	0	2	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0014	2358	1	0	0	0	1	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0015	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0016	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0017	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0018	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0019	2358	1	0	1	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0020	2190	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0021	2358	1	0	0	0	0	1	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0022	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0023	2358	1	1	0	0	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0024	2358	1	0	0	1	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	c0025	2358	1	0	0	1	0	0	copy fasta	IFI16	chr1	159004907	159060151
IFI27L1_chr14_94076310_94107709	0/1	c0001	315	440	97	82	197	18	45	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	c0002	315	6	0	0	3	0	3	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L1_chr14_94076310_94107709	0/0	c0003	315	1	1	0	0	0	0	copy fasta	IFI27L1	chr14	94076310	94107709
IFI27L2_chr14_94122781_94134604	0/1	c0001	393	429	94	70	202	18	44	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	c0002	393	2	0	0	2	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	c0003	393	1	0	0	1	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27L2_chr14_94122781_94134604	0/0	c0004	393	1	0	0	1	0	0	copy fasta	IFI27L2	chr14	94122781	94134604
IFI27_chr14_94105736_94121690	0/0	c0001	369	280	46	42	146	12	34	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/1	c0002	360	150	16	35	80	6	12	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	c0003	369	34	32	2	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	c0004	369	1	0	1	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	c0005	369	1	1	0	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI27_chr14_94105736_94121690	0/0	c0006	369	1	1	0	0	0	0	copy fasta	IFI27	chr14	94105736	94121690
IFI30_chr19_18168813_18183117	1/0	c0001	753	200	43	40	86	4	26	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	c0002	753	87	27	18	24	7	11	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/1	c0003	753	58	22	11	16	3	5	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	c0004	753	2	0	2	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	c0005	753	1	1	0	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	c0006	753	1	1	0	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI30_chr19_18168813_18183117	0/0	c0007	753	1	0	1	0	0	0	copy fasta	IFI30	chr19	18168813	18183117
IFI35_chr17_43001784_43019456	0/1	c0001	861	302	61	57	127	12	44	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	1/0	c0002	861	14	12	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0003	861	11	11	0	0	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0004	861	4	0	0	4	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0005	762	2	0	0	2	0	0	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0006	861	1	0	0	0	0	1	copy fasta	IFI35	chr17	43001784	43019456
IFI35_chr17_43001784_43019456	0/0	c0007	861	1	0	1	0	0	0	copy fasta	IFI35	chr17	43001784	43019456