JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFIH1_chr2_162262074_162323684	0/0	c0015	3078	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0016	3078	1	0	0	0	0	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	c0017	3078	1	0	0	0	1	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIT1B_chr10_89373056_89390205	0/1	c0001	1425	291	61	42	156	8	23	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	1/0	c0002	1425	115	7	35	43	8	21	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0003	1425	18	17	1	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0004	1425	4	4	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0005	1425	3	0	0	3	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0006	1425	2	2	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0007	1425	2	2	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0009	1425	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0010	1425	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0011	1425	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	c0012	1425	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1_chr10_89387623_89411487	0/1	c0001	1437	277	73	58	103	12	30	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0002	1437	109	5	13	75	3	13	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0003	1437	27	10	2	15	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	1/0	c0004	1437	7	0	2	0	1	3	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0005	1437	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0006	1437	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0007	1437	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0008	1437	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0009	1437	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0010	1437	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0011	1437	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0012	1437	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT2_chr10_89297046_89314271	0/0	c0001	1419	202	53	15	109	3	22	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0002	1419	85	23	8	44	1	9	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0003	1419	74	10	18	35	4	7	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	1/0	c0004	1419	44	2	23	4	4	10	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/1	c0005	1419	17	0	10	0	4	2	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0006	1419	3	3	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0007	1419	2	0	0	2	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0008	1419	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0009	1419	1	0	1	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0010	1419	1	0	1	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0011	1419	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	c0012	1419	1	1	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT3_chr10_89322997_89345968	1/0	c0001	1473	246	28	49	128	10	30	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/1	c0002	1473	109	23	19	52	4	10	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0003	1473	22	21	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0004	1473	13	12	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0005	1473	5	4	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0006	1473	2	0	1	0	0	1	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0007	1473	2	2	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0008	1473	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	c0009	1473	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968