JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNA10_chr9_21201181_21212143	0/0	c0014	570	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0015	570	1	0	0	1	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0016	570	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0017	570	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0018	570	1	0	0	1	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0019	570	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0020	570	1	0	0	0	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	c0021	570	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA13_chr9_21362372_21373057	1/1	c0001	573	441	75	83	221	15	45	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0002	573	13	13	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0003	573	5	5	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0004	573	2	2	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0005	573	2	0	0	0	1	1	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0006	573	1	1	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0007	573	1	0	0	1	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	c0008	573	1	0	1	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA14_chr9_21234002_21245005	1/1	c0001	570	439	96	75	203	14	49	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0002	570	5	0	1	4	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0003	570	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0004	570	1	0	0	0	0	1	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0005	570	1	0	1	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0006	570	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0007	570	1	0	1	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	c0008	570	1	0	0	1	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA16_chr9_21211373_21222311	1/1	c0001	570	447	90	78	219	13	45	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0002	570	6	6	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0003	570	5	1	3	0	1	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0004	570	2	1	1	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0005	570	1	0	0	0	0	1	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0006	570	1	0	0	1	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0007	570	1	1	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	c0008	570	1	1	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA17_chr9_21222243_21233222	1/1	c0001	570	266	58	60	93	10	43	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0002	570	163	26	20	110	5	2	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0003	570	5	1	3	0	1	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0004	570	4	4	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0005	570	4	4	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0006	570	3	0	0	3	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0007	570	3	2	1	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0008	570	2	0	0	0	0	2	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0009	570	2	2	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0010	570	1	1	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0011	570	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0012	570	1	1	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0013	570	1	1	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0014	570	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	c0015	570	1	0	0	0	0	1	copy fasta	IFNA17	chr9	21222243	21233222
IFNA1_chr9_21435439_21446316	1/1	c0001	570	408	64	76	206	15	45	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	c0002	570	24	20	1	0	0	3	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	c0003	570	8	8	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316