JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNA1_chr9_21435439_21446316	0/0	c0004	570	4	4	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	c0005	570	4	0	3	0	1	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	c0006	570	2	2	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA21_chr9_21160637_21171660	1/1	c0001	570	428	88	85	192	13	48	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0002	570	24	0	0	23	0	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0003	570	4	1	1	0	1	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0004	570	2	2	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0005	570	2	0	0	2	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0006	570	1	0	0	1	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0007	570	1	1	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0008	570	1	1	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	c0009	570	1	1	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA2_chr9_21379255_21390398	1/1	c0001	567	460	79	83	232	16	48	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0002	567	5	5	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0003	567	5	5	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0004	567	3	3	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0005	567	2	2	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0006	567	2	0	0	2	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	c0007	567	1	0	1	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA4_chr9_21181618_21192587	0/1	c0001	570	192	32	34	89	6	30	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0002	570	136	30	19	81	5	1	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	1/0	c0003	570	87	24	20	22	5	15	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0004	570	3	3	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0005	570	3	3	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0006	570	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0007	570	1	1	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0008	570	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0009	570	1	0	1	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0010	570	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0011	570	1	1	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	c0012	570	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA5_chr9_21299326_21310313	1/1	c0001	570	290	71	55	111	9	42	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0002	570	157	27	20	102	6	2	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0003	570	3	2	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0004	570	1	0	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0005	570	1	0	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0006	570	1	0	0	1	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	c0007	570	1	0	0	0	1	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA6_chr9_21345318_21355887	1/1	c0001	570	301	68	50	134	11	36	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0002	570	100	15	17	61	5	2	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0003	570	9	8	1	0	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0004	570	6	2	2	0	2	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0005	570	2	2	0	0	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0006	570	2	0	0	2	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0007	570	1	1	0	0	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	c0008	570	1	0	0	1	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA7_chr9_21196469_21207205	1/1	c0001	570	404	83	81	180	15	43	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0002	570	37	8	0	28	0	1	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0003	570	5	5	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0004	570	2	0	2	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205