JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNA7_chr9_21196469_21207205	0/0	c0005	570	2	1	0	1	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0006	570	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0007	570	1	0	1	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0008	570	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0009	570	1	0	0	0	1	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0010	570	1	0	0	1	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	c0011	570	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA8_chr9_21404117_21415185	1/1	c0001	570	426	74	73	217	18	42	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	c0002	570	28	22	2	4	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	c0003	570	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	c0004	570	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	c0005	570	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	c0006	570	1	0	1	0	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNAR1_chr21_33319970_33364864	1/0	c0001	1674	210	47	41	86	9	26	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0002	1674	82	6	13	48	3	12	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0003	1674	17	16	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0004	1674	9	9	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0005	1674	3	2	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0006	1674	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	c0007	1674	1	1	0	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR2_chr21_33224938_33270664	1/0	c0001	1548	242	69	47	93	9	23	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/1	c0002	1548	118	12	14	68	7	16	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0003	1548	46	9	9	24	0	4	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0004	1548	4	0	2	2	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0005	1548	2	2	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0006	1548	2	2	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0007	1548	2	0	0	2	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0008	1548	1	0	0	0	0	1	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0009	1548	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0010	1548	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0011	1548	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0012	1548	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0013	1548	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0014	1548	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	c0015	1548	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNB1_chr9_21072104_21082942	1/1	c0001	564	291	55	55	138	11	30	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0002	564	148	31	15	82	7	13	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0003	564	4	4	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0004	564	4	0	0	4	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0005	564	3	3	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0006	564	2	0	0	2	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0007	564	2	2	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0008	564	1	0	0	1	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0009	564	1	1	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0010	564	1	0	0	1	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	c0011	564	1	0	0	0	0	1	copy fasta	IFNB1	chr9	21072104	21082942
IFNE_chr9_21475839_21487313	1/1	c0001	627	363	86	65	161	15	34	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	c0002	627	61	9	5	41	0	6	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	c0003	627	23	1	10	4	1	7	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	c0004	627	1	0	0	0	0	1	copy fasta	IFNE	chr9	21475839	21487313