JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNE_chr9_21475839_21487313	0/0	c0005	627	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	c0006	627	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNGR1_chr6_137192485_137224385	1/1	c0001	1470	296	67	61	132	10	24	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0002	1470	39	6	12	15	2	4	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0003	1470	28	0	1	12	0	15	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0004	1470	6	0	0	6	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0005	1470	5	0	0	5	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0006	1470	4	4	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0007	1470	3	1	1	0	0	1	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0008	1497	2	2	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0009	1470	2	2	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0010	1470	1	0	1	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0011	1470	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0012	1470	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0013	1470	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	c0014	1470	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR2_chr21_33398413_33442516	1/1	c0001	1014	240	52	50	93	14	29	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0002	1014	121	27	19	59	4	12	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0003	1014	12	12	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0004	1014	2	0	0	2	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0005	1014	2	2	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0006	1014	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0007	1014	1	0	1	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0008	1014	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0009	1014	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0011	1014	1	0	0	0	0	1	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0012	1014	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0013	1014	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	c0014	1002	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNG_chr12_68149768_68164740	1/1	c0001	501	422	96	78	190	12	44	copy fasta	IFNG	chr12	68149768	68164740
IFNK_chr9_27519290_27531498	0/1	c0001	624	402	59	80	201	14	47	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	1/0	c0002	624	24	20	2	0	0	1	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0003	624	8	7	1	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0004	628	8	5	1	0	0	2	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0005	624	2	2	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0006	624	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0007	624	1	0	0	1	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0008	624	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	c0009	624	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNL1_chr19_39291407_39303673	1/1	c0001	603	204	25	44	90	11	32	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0002	603	85	59	10	11	4	1	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0003	603	4	4	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0004	603	1	0	0	1	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0005	603	1	0	0	1	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0006	603	1	0	0	0	0	1	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0007	603	1	0	0	1	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0008	603	1	0	0	0	1	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0009	603	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0010	603	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673