JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH4A1_chr1_18866430_18907555	0/0	c0007	1692	9	0	2	3	1	3	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0008	1692	7	6	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0009	1692	5	4	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0010	1692	4	0	2	0	1	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0011	1692	4	4	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0012	1692	3	0	0	0	0	3	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0013	1692	3	1	2	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0014	1692	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0015	1692	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0016	1692	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0017	1692	2	0	2	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0018	1692	2	0	1	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0019	1692	2	0	2	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0020	1692	2	0	2	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0021	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0022	1692	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0023	1692	1	0	0	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0024	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0025	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0026	1692	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0027	1692	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0028	1692	1	0	0	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0029	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0030	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0031	1692	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0032	1692	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0033	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0034	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0035	1692	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0036	1692	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0037	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0038	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0039	1692	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0040	1692	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	c0041	1692	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH5A1_chr6_24489969_24542207	1/1	c0001	1608	246	52	48	112	8	24	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0002	1608	73	31	14	14	2	12	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0003	1608	31	0	2	20	0	9	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0004	1608	2	0	0	2	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0005	1608	2	0	0	0	0	2	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0006	1608	2	2	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0007	1608	2	0	2	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0008	1608	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0009	1608	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0010	1608	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0011	1608	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0012	1608	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0013	1608	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0014	1608	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0015	1608	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207