JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNL1_chr19_39291407_39303673	0/0	c0011	603	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	c0012	603	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL2_chr19_39263396_39275188	1/0	c0001	603	303	34	60	169	12	27	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/1	c0002	603	43	4	11	7	4	16	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0003	603	23	10	0	12	0	1	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0004	603	18	18	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0005	603	10	10	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0006	603	8	6	0	0	2	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0007	603	4	4	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0008	603	3	0	2	1	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0009	603	2	0	0	2	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0010	603	2	0	2	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0011	603	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0012	603	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0013	603	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0014	603	1	0	0	1	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0015	603	1	0	1	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	c0016	603	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL3_chr19_39238553_39250006	1/1	c0001	591	229	22	45	120	4	36	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0002	591	109	52	23	19	7	8	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0003	591	15	0	1	14	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0004	591	12	0	10	2	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0005	591	7	7	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0006	591	3	3	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0007	591	2	2	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0008	591	2	0	0	0	0	2	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0009	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0010	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0011	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0012	591	1	0	0	0	0	1	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0013	591	1	0	0	1	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0014	591	1	0	1	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0015	591	1	0	0	0	0	1	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0016	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0017	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0018	591	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	c0019	591	1	0	0	0	1	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNLR1_chr1_24149168_24192289	1/1	c0001	1563	303	42	57	151	12	39	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0002	1563	47	21	7	12	2	5	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0003	1563	13	10	2	0	0	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0004	1563	10	6	4	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0005	1563	4	4	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0006	1563	3	3	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0007	1563	3	0	0	0	2	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0008	1563	2	1	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0009	1563	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0010	1563	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0011	1563	1	0	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289